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A Database of Extreme Multifunctional and Moonlighting Proteins
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Protein: Q06406
UniprotKB AC
UniprotKB ID
Gene name
Full name
Species
Curated set
Q06406 (Uniprot)
LSM6_YEAST
LSM6
U6 snRNA-associated Sm-like protein LSm6
yeast
No
Protein Function
Uniprot:
Component of LSm protein complexes, which are involved in RNA processing and may function in a chaperone-like manner, facilitating the efficient association of RNA processing factors with their substrates. Component of the cytoplasmic LSM1-LSM7 complex, which is involved in mRNA degradation by activating the deca
pping step in the 5'-to-3' mRNA decay pathway. In association with PAT1, LSM1-LSM7 binds directly to RNAs near the 3'-end and prefers oligoadenylated RNAs over polyadenylated RNAs. Component of the nuclear LSM2-LSM8 complex, which is involved in splicing of nuclear mRNAs. LSM2-LSM8 associates with multiple snRNP complexes containing the U6 snRNA (U4/U6 di-snRNP, spliceosomal U4/U6.U5 tri-snRNP, and free U6 snRNP). It binds directly to the 3'-terminal U-tract of U6 snRNA and plays a role in the biogenesis and stability of the U6 snRNP and U4/U6 snRNP complexes. LSM2-LSM8 probably also is involved degradation of nuclear pre-mRNA by targeting them for decapping, and in processing of pre-tRNAs, pre-rRNAs and U3 snoRNA. Component of a nucleolar LSM2-LSM7 complex, which associates with the precursor of the RNA component of RNase P (pre-P RNA) and with the small nucleolar RNA (snoRNA) snR5. It may play a role in the maturation of a subset of nucleolus-associated small RNAs.
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MoonDB Dissimilar Functions
Showing 1 to 1 of 1 entries
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GO ID 1
Function 1
Module ID 1
GO ID 2
Function 2
Module ID 2
Association Probability
(PrOnto)
Interaction Probability
(PrOnto)
GO:1901564
organonitrogen compound metabolic process
1307
GO:0000377
RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
1363
5.47e-08
1.83e-20
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MoonDB Network Modules
Biological Processes
Showing 1 to 9 of 9 entries
Search:
Module ID
(MoonGO)
GO ID (BP)
GO Name
1099
GO:0016070
RNA metabolic process
1099
GO:0010467
gene expression
1180
GO:0016070
RNA metabolic process
1180
GO:0010467
gene expression
1180
GO:0060255
regulation of macromolecule metabolic process
1307
GO:1901566
organonitrogen compound biosynthetic process
1363
GO:0000398
mRNA splicing, via spliceosome
1363
GO:0006364
rRNA processing
1363
GO:0008033
tRNA processing
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Cellular Components
Showing 1 to 10 of 11 entries
Search:
Module ID
(MoonGO)
GO ID (CC)
GO Name
1099
GO:0030529
intracellular ribonucleoprotein complex
1180
GO:0005634
nucleus
1307
GO:0012505
endomembrane system
1307
GO:0016021
integral component of membrane
1307
GO:0031984
organelle subcompartment
1363
GO:1990726
Lsm1-7-Pat1 complex
1363
GO:0046540
U4/U6 x U5 tri-snRNP complex
1363
GO:0005688
U6 snRNP
1363
GO:0005730
nucleolus
1363
GO:0005732
small nucleolar ribonucleoprotein complex
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Protein GO Annotations
Biological Processes
Showing 1 to 3 of 3 entries
Search:
GO ID (BP)
GO Name
Evidence Code
(GO EC)
GO:0000398
mRNA splicing, via spliceosome
IPI
GO:0008033
tRNA processing
IEA
GO:0030490
maturation of SSU-rRNA
IMP
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Cellular Components
Showing 1 to 7 of 7 entries
Search:
GO ID (CC)
GO Name
Evidence Code
(GO EC)
GO:0000932
P-body
IDA
GO:0005681
spliceosomal complex
IEA
GO:0005688
U6 snRNP
IDA
GO:0005730
nucleolus
IDA
GO:0005732
small nucleolar ribonucleoprotein complex
IPI
GO:0046540
U4/U6 x U5 tri-snRNP complex
IDA
GO:1990726
Lsm1-7-Pat1 complex
IDA
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Dissimilar Cellular Components (PrOnto)
No pairs of PrOnto dissimilar CC GO terms found.
All Protein Interactions
Showing 1 to 10 of 17 entries
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Interactor
Also a MoonDB EMF protein
ATP14_YEAST
Yes:
Q12349 (MoonDB)
FMP42_YEAST
No
GNT1_YEAST
No
HFM1_YEAST
No
LSM1_YEAST
Yes:
P47017 (MoonDB)
LSM2_YEAST
No
LSM3_YEAST
No
LSM4_YEAST
No
LSM5_YEAST
No
LSM7_YEAST
No
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Publications Associated
Showing 1 to 10 of 15 entries
Search:
PMID
Article Title
9169867
The nucleotide sequence of Saccharomyces cerevisiae chromosome IV.
10369684
Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin.
10428970
Characterization of Sm-like proteins in yeast and their association with U6 snRNA.
10449419
Identification by mass spectrometry and functional analysis of novel proteins of the yeast [U4/U6.U5] tri-snRNP.
10747033
A Sm-like protein complex that participates in mRNA degradation.
10761922
Yeast Sm-like proteins function in mRNA decapping and decay.
15075370
An Lsm2-Lsm7 complex in Saccharomyces cerevisiae associates with the small nucleolar RNA snR5.
15485930
Nuclear pre-mRNA decapping and 5' degradation in yeast require the Lsm2-8p complex.
15905473
Mapping of transcription start sites in Saccharomyces cerevisiae using 5' SAGE.
17513695
The decapping activator Lsm1p-7p-Pat1p complex has the intrinsic ability to distinguish between oligoadenylated and polyadenylated RNAs.
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OMIM Diseases Associated
No results found.
Protein Domains Associated
Showing 1 to 8 of 8 entries
Search:
Domain Name
Domain ID
Source
LSM
PF01423
Pfam
Lsm6/sSmF
IPR016487
InterPro
LSM_dom_euk/arc
IPR001163
InterPro
LSM_dom_sf
IPR010920
InterPro
PTHR11021
PTHR11021
PANTHER
S61173
S61173
PIR
Sm
SM00651
SMART
SSF50182
SSF50182
SUPFAM
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