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A Database of Extreme Multifunctional and Moonlighting Proteins
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Protein: Q9NPD3
UniprotKB AC
UniprotKB ID
Gene name
Full name
Species
Curated set
Q9NPD3 (Uniprot)
EXOS4_HUMAN
EXOSC4
Exosome complex component RRP41
human
No
Protein Function
Uniprot:
Non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elim
ination of RNA processing by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and promoter-upstream transcripts (PROMPTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm. The RNA exosome may be involved in Ig class switch recombination (CSR) and/or Ig variable region somatic hypermutation (SHM) by targeting AICDA deamination activity to transcribed dsDNA substrates. In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and specifically degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3' untranslated regions, and in RNA surveillance pathways, preventing translation of aberrant mRNAs. It seems to be involved in degradation of histone mRNA. The catalytic inactive RNA exosome core complex of 9 subunits (Exo-9) is proposed to play a pivotal role in the binding and presentation of RNA for ribonucleolysis, and to serve as a scaffold for the association with catalytic subunits and accessory proteins or complexes. EXOSC4 binds to ARE-containing RNAs.
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MoonDB Dissimilar Functions
Showing 1 to 1 of 1 entries
Search:
GO ID 1
Function 1
Module ID 1
GO ID 2
Function 2
Module ID 2
Association Probability
(PrOnto)
Interaction Probability
(PrOnto)
GO:0006464
cellular protein modification process
375
GO:0016070
RNA metabolic process
719
5.81e-04
8.44e-05
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MoonDB Network Modules
Biological Processes
Showing 1 to 6 of 6 entries
Search:
Module ID
(MoonGO)
GO ID (BP)
GO Name
375
GO:0070647
protein modification by small protein conjugation or removal
375
GO:0060255
regulation of macromolecule metabolic process
719
GO:0006401
RNA catabolic process
719
GO:0016071
mRNA metabolic process
719
GO:0010629
negative regulation of gene expression
719
GO:0019219
regulation of nucleobase-containing compound metabolic process
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Cellular Components
Showing 1 to 6 of 6 entries
Search:
Module ID
(MoonGO)
GO ID (CC)
GO Name
375
GO:0005829
cytosol
375
GO:0005634
nucleus
598
GO:0016021
integral component of membrane
719
GO:0005829
cytosol
719
GO:0043232
intracellular non-membrane-bounded organelle
719
GO:0005634
nucleus
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Protein GO Annotations
Biological Processes
Showing 1 to 10 of 16 entries
Search:
GO ID (BP)
GO Name
Evidence Code
(GO EC)
GO:0000460
maturation of 5.8S rRNA
IMP
GO:0000956
nuclear-transcribed mRNA catabolic process
IMP
GO:0006364
rRNA processing
TAS
GO:0016075
rRNA catabolic process
IBA
GO:0030307
positive regulation of cell growth
IMP
GO:0031125
rRNA 3'-end processing
IBA
GO:0034427
nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
IBA
GO:0034475
U4 snRNA 3'-end processing
IBA
GO:0043488
regulation of mRNA stability
TAS
GO:0043928
exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
TAS
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Cellular Components
Showing 1 to 10 of 10 entries
Search:
GO ID (CC)
GO Name
Evidence Code
(GO EC)
GO:0000176
nuclear exosome (RNase complex)
IBA
GO:0000177
cytoplasmic exosome (RNase complex)
IBA
GO:0000178
exosome (RNase complex)
IDA
GO:0005634
nucleus
IDA
GO:0005654
nucleoplasm
TAS
GO:0005730
nucleolus
NAS
GO:0005737
cytoplasm
IDA
GO:0005829
cytosol
TAS
GO:0035327
transcriptionally active chromatin
IMP
GO:0045111
intermediate filament cytoskeleton
IDA
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Dissimilar Cellular Components (PrOnto)
No pairs of PrOnto dissimilar CC GO terms found.
All Protein Interactions
Showing 1 to 10 of 22 entries
Search:
Interactor
Also a MoonDB EMF protein
AK1A1_HUMAN
No
DPOE2_HUMAN
No
DXO_HUMAN
No
EF1A1_HUMAN
No
EXOS1_HUMAN
No
EXOS2_HUMAN
No
EXOS3_HUMAN
No
EXOS7_HUMAN
Yes:
Q15024 (MoonDB)
EXOS9_HUMAN
No
EXOSX_HUMAN
No
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Publications Associated
Showing 1 to 10 of 18 entries
Search:
PMID
Article Title
10465791
The yeast exosome and human PM-Scl are related complexes of 3'-->5' exonucleases.
11110791
Three novel components of the human exosome.
11719186
AU binding proteins recruit the exosome to degrade ARE-containing mRNAs.
14702039
Complete sequencing and characterization of 21,243 full-length human cDNAs.
15489334
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
16421571
DNA sequence and analysis of human chromosome 8.
16912217
Sequence-specific RNA binding mediated by the RNase PH domain of components of the exosome.
17174896
Reconstitution, activities, and structure of the eukaryotic RNA exosome.
17545563
Human cell growth requires a functional cytoplasmic exosome, which is involved in various mRNA decay pathways.
18172165
Degradation of histone mRNA requires oligouridylation followed by decapping and simultaneous degradation of the mRNA both 5' to 3' and 3' to 5'.
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OMIM Diseases Associated
No results found.
Protein Domains Associated
Showing 1 to 9 of 9 entries
Search:
Domain Name
Domain ID
Source
ExoRNase_PH_dom1
IPR001247
InterPro
ExoRNase_PH_dom2
IPR015847
InterPro
ExoRNase_PH_dom2_sf
IPR036345
InterPro
PNPase/RNase_PH_dom_sf
IPR027408
InterPro
Ribosomal_S5_D2-typ_fold
IPR020568
InterPro
RNase_PH
PF01138
Pfam
RNase_PH_C
PF03725
Pfam
SSF54211
SSF54211
SUPFAM
SSF55666
SSF55666
SUPFAM
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