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A Database of Extreme Multifunctional and Moonlighting Proteins
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Protein: Q15024
UniprotKB AC
UniprotKB ID
Gene name
Full name
Species
Curated set
Q15024 (Uniprot)
EXOS7_HUMAN
EXOSC7
Exosome complex component RRP42
human
No
Protein Function
Uniprot:
Non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elim
ination of RNA processing by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and promoter-upstream transcripts (PROMPTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm. The RNA exosome may be involved in Ig class switch recombination (CSR) and/or Ig variable region somatic hypermutation (SHM) by targeting AICDA deamination activity to transcribed dsDNA substrates. In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and specifically degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3' untranslated regions, and in RNA surveillance pathways, preventing translation of aberrant mRNAs. It seems to be involved in degradation of histone mRNA. The catalytic inactive RNA exosome core complex of 9 subunits (Exo-9) is proposed to play a pivotal role in the binding and presentation of RNA for ribonucleolysis, and to serve as a scaffold for the association with catalytic subunits and accessory proteins or complexes.
more..
MoonDB Dissimilar Functions
GO ID 1
Function 1
Module ID 1
GO ID 2
Function 2
Module ID 2
Association Probability
(PrOnto)
Interaction Probability
(PrOnto)
GO:0006464
cellular protein modification process
375
GO:0016070
RNA metabolic process
719
5.81e-04
8.44e-05
MoonDB Network Modules
Biological Processes
Module ID
(MoonGO)
GO ID (BP)
GO Name
375
GO:0070647
protein modification by small protein conjugation or removal
375
GO:0060255
regulation of macromolecule metabolic process
719
GO:0006401
RNA catabolic process
719
GO:0016071
mRNA metabolic process
719
GO:0010629
negative regulation of gene expression
719
GO:0019219
regulation of nucleobase-containing compound metabolic process
Cellular Components
Module ID
(MoonGO)
GO ID (CC)
GO Name
375
GO:0005829
cytosol
375
GO:0005634
nucleus
719
GO:0005829
cytosol
719
GO:0043232
intracellular non-membrane-bounded organelle
719
GO:0005634
nucleus
Protein GO Annotations
Biological Processes
GO ID (BP)
GO Name
Evidence Code
(GO EC)
GO:0000467
exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
IBA
GO:0006364
rRNA processing
TAS
GO:0006401
RNA catabolic process
NAS
GO:0034427
nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
IBA
GO:0034473
U1 snRNA 3'-end processing
IBA
GO:0034475
U4 snRNA 3'-end processing
IBA
GO:0034476
U5 snRNA 3'-end processing
IBA
GO:0043488
regulation of mRNA stability
TAS
GO:0043928
exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
TAS
GO:0071028
nuclear mRNA surveillance
IBA
GO:0071035
nuclear polyadenylation-dependent rRNA catabolic process
IBA
GO:0071038
nuclear polyadenylation-dependent tRNA catabolic process
IBA
GO:0071042
nuclear polyadenylation-dependent mRNA catabolic process
IBA
Cellular Components
GO ID (CC)
GO Name
Evidence Code
(GO EC)
GO:0000176
nuclear exosome (RNase complex)
IBA
GO:0000177
cytoplasmic exosome (RNase complex)
IBA
GO:0000178
exosome (RNase complex)
IDA
GO:0005654
nucleoplasm
TAS
GO:0005730
nucleolus
IEA
GO:0005829
cytosol
TAS
Dissimilar Cellular Components (PrOnto)
No pairs of PrOnto dissimilar CC GO terms found.
All Protein Interactions
Interactor
Also a MoonDB EMF protein
ERR3_HUMAN
No
UBE2K_HUMAN
Yes:
P61086 (MoonDB)
IP6K1_HUMAN
No
EXOS4_HUMAN
Yes:
Q9NPD3 (MoonDB)
MTMR3_HUMAN
No
UB2Q2_HUMAN
No
EXOS2_HUMAN
No
DXO_HUMAN
No
EXOSX_HUMAN
No
EXOS1_HUMAN
No
EXOS6_HUMAN
No
UB2Q1_HUMAN
No
Publications Associated
PMID
Article Title
7788527
Prediction of the coding sequences of unidentified human genes. III. The coding sequences of 40 new genes (KIAA0081-KIAA0120) deduced by analysis of cDNA clones from human cell line KG-1.
11719186
AU binding proteins recruit the exosome to degrade ARE-containing mRNAs.
11812149
Protein-protein interactions of hCsl4p with other human exosome subunits.
12419256
Protein-protein interactions between human exosome components support the assembly of RNase PH-type subunits into a six-membered PNPase-like ring.
15231747
A protein interaction framework for human mRNA degradation.
15489334
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
16641997
The DNA sequence, annotation and analysis of human chromosome 3.
17174896
Reconstitution, activities, and structure of the eukaryotic RNA exosome.
19413330
Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach.
19608861
Lysine acetylation targets protein complexes and co-regulates major cellular functions.
20531389
Dis3-like 1: a novel exoribonuclease associated with the human exosome.
21269460
Initial characterization of the human central proteome.
21876179
Zinc-finger antiviral protein inhibits HIV-1 infection by selectively targeting multiply spliced viral mRNAs for degradation.
22223895
Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.
23186163
Toward a comprehensive characterization of a human cancer cell phosphoproteome.
OMIM Diseases Associated
No results found.
Protein Domains Associated
Domain Name
Domain ID
Source
ExoRNase_PH_dom1
IPR001247
InterPro
ExoRNase_PH_dom2
IPR015847
InterPro
Ribosomal_S5_D2-typ_fold
IPR020568
InterPro
PNPase/RNase_PH_dom_sf
IPR027408
InterPro
ExoRNase_PH_dom2_sf
IPR036345
InterPro
RNase_PH
PF01138
Pfam
RNase_PH_C
PF03725
Pfam
SSF54211
SSF54211
SUPFAM
SSF55666
SSF55666
SUPFAM